OsiriX 3.5.1 – 3D medical image processing software with DICOM/PACS support.

May 7, 2009

OsiriX 3.5.1

OsiriX is an image processing software dedicated to DICOM images (“.dcm” / “.DCM” extension) produced by medical equipment (MRI, CT, PET, PET-CT, …) and confocal microscopy (LSM and BioRAD-PIC format). It can also read many other file formats: TIFF (8,16, 32 bits), JPEG, PDF, AVI, MPEG and Quicktime. It is fully compliant with the DICOM standard for image comunication and image file formats. OsiriX is able to receive images transferred by DICOM communication protocol from any PACS or medical imaging modality (STORE SCP – Service Class Provider, STORE SCU – Service Class User, and Query/Retrieve).

OsiriX has been specifically designed for navigation and visualization of multimodality and multidimensional images: 2D Viewer, 3D Viewer, 4D Viewer (3D series with temporal dimension, for example: Cardiac-CT) and 5D Viewer (3D series with temporal and functional dimensions, for example: Cardiac-PET-CT). The 3D Viewer offers all modern rendering modes: Multiplanar reconstruction (MPR), Surface Rendering, Volume Rendering and Maximum Intensity Projection (MIP). All these modes support 4D data and are able to produce image fusion between two different series (for example: PET-CT).

Osirix is at the same time a DICOM PACS workstation for medical imaging and an image processing software for medical research (radiology and nuclear imaging), functional imaging, 3D imaging, confocal microscopy and molecular imaging.

Osirix supports a complete plug-ins architecture that allows you to expand the capabilities of OsiriX for your personal needs! This plug-in architecture gives you access to the powerful Cocoa framework with an easy object-oriented and dynamic language: Objective-C.

A Wiki Manual is available.

Features:

DICOM File Support:

  • Read and display all DICOM Files (mono-frame, multi-frames)
  • Read and display the new MRI/CT multi-frame format (5200 group)
  • JPEG Lossy, JPEG Lossless, JPEG2000, RLE
  • Monochrome1, Monochrome2, RGB, YBR, Planar, Palettes, …
  • Support custom (non-square) Pixel Aspect Ratio
    8, 12, 16, 32 bits

  • Write ‘SC’ (Secondary Capture) DICOM Files from any 2D/3D reconstructions
  • Read and display all DICOM Meta-Data
  • Read AND Write DICOM CD/DVD (DICOMDIR support)
  • Export DICOM Files to TIFF, JPEG, Quicktime, RAW, DICOM, PACS

DICOM Network Support:

  • Store User (STORE-SCU, DICOM Send)
  • Store Provider (STORE-SCP, DICOM Listener)
  • C-FIND SCU/SCP, C-MOVE SCU/SCP : Query and Retrieve studies from/to a PACS workstation

Non-DICOM Files Support:

  • LSM files from Zeiss (8, 16, 32 bits) (Confocal Microscopy)
  • BioRadPIC files (8, 16, 32 bits) (Confocal Microscopy)
  • TIFF (8, 12, 16, 32 bits), multi-pages
  • ANALYZE (8, 12, 16, 32 bits)
  • PNG, JPEG, PDF (multi-pages), Quicktime, AVI, MPEG, MPEG4

2D Viewer:

  • Customizable Toolbars
  • Bicubic Interpolation
  • Thick Slab for multi-slices CT and MRI (Mean, MIP, Volume Rendering)
  • ROIs: Polygons, Circles, Pencil, Rectangles, Point, …
  • Multi-Buttons and Scroll-wheel mouses supported
  • Custom CLUT (Color Look-Up Tables)
  • Custom 3×3 and 5×5 Convolution Filters (Bone filters, …)
  • 4D Viewer for Cardiac-CT and other temporal series
  • Image Fusion for PET-CT exams with adjustable blending percentage
  • Image subtraction for XA
  • Plugins support for external functions

3D Post-Processing:

  • MPR (Multiplanar Reconstruction) with Thick Slab (Mean, MIP, Volume Rendering)
  • Curved-MPR
  • MIP (Maximum Intensity Projection)
  • Volume Rendering
  • Surface Rendering
  • Stereo Vision with Red/Blue glasses
  • Export any 3D images to Quicktime, Quicktime VR, TIFF, JPEG
  • All 3D viewers support ‘Image Fusion’ for PET-CT exams and ‘4D mode’ for Cardiac-CT.

Optimization:

  • Universal application, compiled for Intel and PowerPC processors
  • Altivec (Velocity Engine) enhanced
  • G5 alignment (for best performance on G5 processors)
  • Multi-threaded for multi-processors and dual-core processors support
  • Asyncronous reading
  • Based on the Altivec & Multi-Threaded vImage library
  • OpenGL for 2D Viewer and all 3D Viewers
  • Graphic board accelerated, with 3D texture mapping support
  • Optimized version for 3D Volume Rendering boards by TeraRecon : VolumePRO VP1000 series

Expansion & Scientific Research:

  • OsiriX supports a complete dynamic plugins architecture
  • Access pixels directly in 32-bits float for B&W images or ARGB values for color images
  • Create and manage windows
  • Access the entire Cocoa framework
  • Create and manage OpenGL views
  • Faster than IDL, Easier than ImageJ

Based on Open-Source components:

  • Cocoa (OpenStep, GNUStep, NextStep)
  • VTK (Visualization Toolkit)
  • ITK (Insight Toolkit)
  • PixelMed (David Clunie)
  • Papyrus 3.0 (Digital Imaging Unit)
  • DICOM Offis
  • OpenGL
  • XML-Expat
  • LibTIFF
  • Jasper
  • LibJPEG

Please, send any comments, bug reports and ideas to improve OsiriX!

WHAT’S NEW
Version 3.5.1:
  • Clipping Plane option in 3D VR/MIP viewer
  • Super Sampling for Volume Rendering: Better rendering quality
  • A new MPR viewer: 3D-MPR (it replaces the old 2D-MPR)
  • Export MIP images in 16-bit
  • Automatically adjust printing layout
  • Better support for multi-frame CT/MR format (0×5200 group)
  • Better performance for multi-frame files, up to 10 times faster for reading
  • Multi-frame images are now available at the image level in the DB
  • Multi-threaded loading function, ready for best performances on SSD drives
  • Option to mark Secondary Capture images as Key Images
  • Option to automatically send Secondary Capture images to a DICOM node
  • Patient Level for DICOM Editor
  • Scroll Through Series option – See 2D Viewer Preferences
  • Full 32-bit OpenGL pipeline (experimental) – See 2D Viewer Preferences
  • Option to only allow a user to display images of the same patient
  • Export Database Displayed List as a tab separated file
  • Regenerate DICOM comments field (see Database Preferences)
  • Scale level for parallel 3D projections
  • Big-Endian Encoded DICOM files are now natively supported
  • Option to lock / unlock ROIs
  • Option to make ROIs selectable / unselectable
  • Option to not delete studies if the comment field is filled (db auto-cleaning)
  • Option to unify multiple patients/studies as the same patient
  • SPECT-CT fusion support
  • DICOM QuickLook version 1.1
  • Better support for C-Move, C-Store and C-Find
  • DICOM Validator tool, updated to latest version (Feb.2009)
  • Support for FujiPrivateCR SOP Class UID
  • Better JPEG2000 support

REQUIREMENTS
Mac OS X 10.5 or later; G4/G5/Intel processor (G5 or Intel processors highly recommended for 3D!); 1GB/2GB/4GB of RAM for 800/1500/3000 images.

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